Bioconductor GAGE package

Showing : GAGE package • reset

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1.3k

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gage package gage

7.5 years ago melkile26 • 0

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1.7k

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gage gage package gene expression matrix gene set analysis

7.6 years ago atakanekiz ▴ 30

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3.4k

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gage package error

updated 7.7 years ago by James W. MacDonald 68k • written 7.7 years ago by Miskey, Csaba ▴ 20

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4.8k

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gage gage package pathview rna-seq

updated 3.9 years ago by Helen • 0 • written 8.0 years ago by tarun2 • 0

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3.0k

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kegg geneset genelist gage package

updated 8.5 years ago by Gordon Smyth 53k • written 8.5 years ago by sup230 ▴ 30

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1.9k

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gage package deseq2

8.5 years ago sup230 ▴ 30

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2.2k

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gage gage package

updated 9.3 years ago by Luo Weijun ★ 1.6k • written 9.3 years ago by Michael • 0

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2.0k

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R gage package rnaseq pathview

9.5 years ago joanito.liberti • 0

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1.4k

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gage package path.ids RNA-Seq

9.5 years ago rl1385 • 0

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1.3k

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t-test GAGE package Kolmogorov-Smirnov test Gene-Set enrichment

9.6 years ago smt8n • 0

10 results • Page 1 of 1

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Comment: GOseq Probability Weight Function bad fit by a2sahaaaq2c • 0

the mobile gaming world offers a different kind of strategic challenge. Many users today are shifting from heavy data processing to lighthe…

Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0

Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…

Comment: DiffBind plot.profile error by a2sahaaaq2c • 0

To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…

Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

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Popular Question to Guido Hooiveld ★ 4.1k